AI Bioworkflow AI Agent
by yuanzhwAuditable bioinformatics workflow compiler: Catalog-bound planning, Workflow IR, and validated WDL 1.0.
AI Bioworkflow is an open-source ai agent by yuanzhw, written mainly in Python, with 96 GitHub stars and the Apache-2.0 license. Its code was last updated Oct 15, 2026.
Scan summary: scanned Nov 5, 2026 at commit 497104e. Seen able to connect to the internet. Scan policy
ScannedScanned. The automated checks below ran on the commit shown. Read each line for what was and was not covered.
Full scan at
497104e · Nov 5, 2026 ScannedStatic, secrets and dependency checks completed with no critical findings. BuildsIt installed from a fresh machine.
Warning. This check found something worth reading in the findings below. It is not proof of a problem.Static code scanwarnWarning. This check found something worth reading in the findings below. It is not proof of a problem.
Passed. This check ran and found nothing it flags.Secrets scanpassPassed. This check ran and found nothing it flags.
Flagged. This check found an issue. See the findings below.Dependency audit57 known vulnerabilitiesfailFlagged. This check found an issue. See the findings below.
Warning. This check found something worth reading in the findings below. It is not proof of a problem.ManifestnonewarnWarning. This check found something worth reading in the findings below. It is not proof of a problem.
Passed. This check ran and found nothing it flags.BuildpassPassed. This check ran and found nothing it flags.
Not applicable. This check does not apply to this kind of project, or it was not run in this scan.Boot & handshaken/aNot applicable. This check does not apply to this kind of project, or it was not run in this scan.
Warning. This check found something worth reading in the findings below. It is not proof of a problem.Network egresswarnWarning. This check found something worth reading in the findings below. It is not proof of a problem.
Not applicable. This check does not apply to this kind of project, or it was not run in this scan.Reproducible (×3)n/aNot applicable. This check does not apply to this kind of project, or it was not run in this scan.
Findings (24)
- highHigh. Something risky that needs a close look before you install.dependencies issueDetails are available to the maintainer after claiming this listing.
- highHigh. Something risky that needs a close look before you install.dependencies issueDetails are available to the maintainer after claiming this listing.
- highHigh. Something risky that needs a close look before you install.dependencies issueDetails are available to the maintainer after claiming this listing.
- mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.langgraph-sdk@0.3.14: 2 known vulnerabilitiesPYSEC-2026-2575, PYSEC-2026-4240
uv.lock - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.langsmith@0.8.3: 1 known vulnerabilityGHSA-f4xh-w4cj-qxq8
uv.lock - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.starlette@1.2.1: 2 known vulnerabilitiesPYSEC-2026-248, PYSEC-2026-249
uv.lock - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.urllib3@2.7.0: 3 known vulnerabilitiesPYSEC-2026-4175, PYSEC-2026-4176, PYSEC-2026-4177
uv.lock - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.brace-expansion@1.1.15: 6 known vulnerabilitiesGHSA-3jxr-9vmj-r5cp, GHSA-6j4f-fj2g-mc7p, GHSA-mh99-v99m-4gvg, GHSA-q2hr-2g5m-vwhr, GHSA-qhr7-859c-m2p7 +1 more
web/package-lock.json - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.brace-expansion@5.0.6: 6 known vulnerabilitiesGHSA-3jxr-9vmj-r5cp, GHSA-6j4f-fj2g-mc7p, GHSA-mh99-v99m-4gvg, GHSA-q2hr-2g5m-vwhr, GHSA-qhr7-859c-m2p7 +1 more
web/package-lock.json - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.browserslist@4.28.2: 2 known vulnerabilitiesGHSA-73wf-gq98-2v4g, GHSA-c83g-rgw3-j3cx
web/package-lock.json - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.js-yaml@4.2.0: 3 known vulnerabilitiesGHSA-2883-xcg3-v3hh, GHSA-52cp-r559-cp3m, GHSA-5p4m-2wfm-xmqj
web/package-lock.json - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.nanoid@3.3.12: 2 known vulnerabilitiesGHSA-28wg-ghj8-5hjv, GHSA-2v37-7h3g-55p8
web/package-lock.json - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.postcss@8.5.15: 2 known vulnerabilitiesGHSA-fxqj-rqcc-2cmp, GHSA-r28c-9q8g-f849
web/package-lock.json - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.sharp@0.34.5: 3 known vulnerabilitiesGHSA-f88m-g3jw-g9cj, GHSA-rgj7-g3m4-5g8c, GHSA-wq5f-xc86-pv6w
web/package-lock.json - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.source-map-js@1.2.1: 1 known vulnerabilityGHSA-68fv-2mgg-jv7q
web/package-lock.json - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.Install contacted hosts other than package registriesreleases.astral.sh
- lowLow. Minor, or common in normal tools. Shown for information.idna@3.13: 1 known vulnerabilityPYSEC-2026-215
uv.lock - lowLow. Minor, or common in normal tools. Shown for information.langchain@1.2.18: 1 known vulnerabilityPYSEC-2026-2192
uv.lock - lowLow. Minor, or common in normal tools. Shown for information.langchain-anthropic@1.4.3: 1 known vulnerabilityPYSEC-2026-2556
uv.lock - lowLow. Minor, or common in normal tools. Shown for information.langgraph-checkpoint@4.0.3: 1 known vulnerabilityPYSEC-2026-2573
uv.lock - lowLow. Minor, or common in normal tools. Shown for information.baseline-browser-mapping@2.10.36: 1 known vulnerabilityGHSA-w5vr-8v7q-w6rv
web/package-lock.json - lowLow. Minor, or common in normal tools. Shown for information.minimatch@10.2.5: 1 known vulnerabilityGHSA-g3hv-75wg-m249
web/package-lock.json - lowLow. Minor, or common in normal tools. Shown for information.postcss-selector-parser@6.1.4: 1 known vulnerabilityGHSA-rj75-hqrm-r3gf
web/package-lock.json - lowLow. Minor, or common in normal tools. Shown for information.No manifest declaring network access and environment variables (agent.json)
Network activity
During install
files.pythonhosted.orgpypi.orgreleases.astral.sh
While running
Not run — the code wasn't started in this scan
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| Name | Stars | Licence | Last updated | Scan |
|---|---|---|---|---|
| AI Bioworkflow (this page) yuanzhw | 96 | Apache-2.0 | Oct 15, 2026 | Scanned, no flagged issues |
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| Sim simstudioai | 30k | Apache-2.0 | Nov 1, 2026 | Scanned, see report |