AIAgents4Pharma AI Agent
by VirtualPatientEngineAI Agents for drug discovery, drug development, and other pharmaceutical R&D
AIAgents4Pharma is an open-source ai agent by VirtualPatientEngine, written mainly in Python, with 107 GitHub stars and the MIT license. Its code was last updated Mar 30, 2026.
Scan summary: scanned Nov 5, 2026 at commit ef8d146. Seen able to run shell commands, connect to the internet. Scan policy
ScannedScanned. The automated checks below ran on the commit shown. Read each line for what was and was not covered.
Full scan at
ef8d146 · Nov 5, 2026 ScannedStatic, secrets and dependency checks completed with no critical findings.
Warning. This check found something worth reading in the findings below. It is not proof of a problem.Static code scanwarnWarning. This check found something worth reading in the findings below. It is not proof of a problem.
Passed. This check ran and found nothing it flags.Secrets scanpassPassed. This check ran and found nothing it flags.
Flagged. This check found an issue. See the findings below.Dependency audit465 known vulnerabilitiesfailFlagged. This check found an issue. See the findings below.
Warning. This check found something worth reading in the findings below. It is not proof of a problem.ManifestnonewarnWarning. This check found something worth reading in the findings below. It is not proof of a problem.
Flagged. This check found an issue. See the findings below.BuildfailFlagged. This check found an issue. See the findings below.
Not applicable. This check does not apply to this kind of project, or it was not run in this scan.Boot & handshaken/aNot applicable. This check does not apply to this kind of project, or it was not run in this scan.
Warning. This check found something worth reading in the findings below. It is not proof of a problem.Network egresswarnWarning. This check found something worth reading in the findings below. It is not proof of a problem.
Not applicable. This check does not apply to this kind of project, or it was not run in this scan.Reproducible (×3)n/aNot applicable. This check does not apply to this kind of project, or it was not run in this scan.
Findings (67)
- highHigh. Something risky that needs a close look before you install.dependencies issueDetails are available to the maintainer after claiming this listing.
- highHigh. Something risky that needs a close look before you install.dependencies issueDetails are available to the maintainer after claiming this listing.
- highHigh. Something risky that needs a close look before you install.dependencies issueDetails are available to the maintainer after claiming this listing.
- highHigh. Something risky that needs a close look before you install.dependencies issueDetails are available to the maintainer after claiming this listing.
- highHigh. Something risky that needs a close look before you install.dependencies issueDetails are available to the maintainer after claiming this listing.
- highHigh. Something risky that needs a close look before you install.dependencies issueDetails are available to the maintainer after claiming this listing.
- highHigh. Something risky that needs a close look before you install.dependencies issueDetails are available to the maintainer after claiming this listing.
- highHigh. Something risky that needs a close look before you install.dependencies issueDetails are available to the maintainer after claiming this listing.
- highHigh. Something risky that needs a close look before you install.dependencies issueDetails are available to the maintainer after claiming this listing.
- highHigh. Something risky that needs a close look before you install.dependencies issueDetails are available to the maintainer after claiming this listing.
- highHigh. Something risky that needs a close look before you install.dependencies issueDetails are available to the maintainer after claiming this listing.
- highHigh. Something risky that needs a close look before you install.dependencies issueDetails are available to the maintainer after claiming this listing.
- highHigh. Something risky that needs a close look before you install.dependencies issueDetails are available to the maintainer after claiming this listing.
- highHigh. Something risky that needs a close look before you install.dependencies issueDetails are available to the maintainer after claiming this listing.
- mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.Turns off TLS certificate checking, allowing traffic interception.
aiagents4pharma/talk2cells/tools/scp_agent/search_studies.py:41 - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.Runs shell commands. Fine for some tools, but it means the agent can run anything your user can.
aiagents4pharma/talk2knowledgegraphs/utils/embeddings/ollama.py:49 - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.Runs shell commands. Fine for some tools, but it means the agent can run anything your user can.
aiagents4pharma/talk2knowledgegraphs/utils/enrichments/ollama.py:78 - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.accelerate@1.10.0: 1 known vulnerabilityPYSEC-2026-3804
uv.lock - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.azure-core@1.35.0: 1 known vulnerabilityPYSEC-2026-1208
uv.lock - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.fsspec@2025.3.0: 1 known vulnerabilityPYSEC-2026-4217
uv.lock - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.gdown@5.2.0: 1 known vulnerabilityPYSEC-2026-2158
uv.lock - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.hydra-core@1.3.2: 2 known vulnerabilitiesPYSEC-2026-3850, PYSEC-2026-4221
uv.lock - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.jaraco-context@6.0.1: 1 known vulnerabilityPYSEC-2026-1469
uv.lock - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.langchain@0.3.7: 2 known vulnerabilitiesPYSEC-2026-2192, PYSEC-2026-2555
uv.lock - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.langchain-community@0.3.5: 1 known vulnerabilityPYSEC-2026-1515
uv.lock - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.langchain-nvidia-ai-endpoints@0.3.9: 1 known vulnerabilityGHSA-g28h-2cmm-rj9x
uv.lock - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.langchain-text-splitters@0.3.6: 2 known vulnerabilitiesPYSEC-2026-1520, PYSEC-2026-77
uv.lock - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.langgraph@0.3.34: 1 known vulnerabilityPYSEC-2026-83
uv.lock - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.langgraph-checkpoint@2.1.1: 3 known vulnerabilitiesPYSEC-2026-1527, PYSEC-2026-2573, PYSEC-2026-2574
uv.lock - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.langgraph-sdk@0.1.74: 2 known vulnerabilitiesPYSEC-2026-2575, PYSEC-2026-4240
uv.lock - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.langsmith@0.1.147: 3 known vulnerabilitiesPYSEC-2026-2582, PYSEC-2026-2583, GHSA-f4xh-w4cj-qxq8
uv.lock - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.lxml@6.0.0: 1 known vulnerabilityPYSEC-2026-87
uv.lock - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.mistune@3.1.3: 17 known vulnerabilitiesPYSEC-2026-168, PYSEC-2026-2206, PYSEC-2026-2207, PYSEC-2026-2208, PYSEC-2026-2209 +12 more
uv.lock - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.msgpack@1.1.1: 2 known vulnerabilitiesPYSEC-2026-3625, GHSA-j586-36cw-2gc2
uv.lock - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.nbconvert@7.16.6: 4 known vulnerabilitiesPYSEC-2026-1691, PYSEC-2026-2229, PYSEC-2026-2230, GHSA-pjvx-prjx-h659
uv.lock - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.orjson@3.11.2: 1 known vulnerabilityPYSEC-2026-107
uv.lock - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.pip@25.2: 6 known vulnerabilitiesPYSEC-2026-1795, PYSEC-2026-1796, PYSEC-2026-196, PYSEC-2026-2875, PYSEC-2026-2876 +1 more
uv.lock - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.protobuf@5.29.5: 1 known vulnerabilityPYSEC-2026-1805
uv.lock - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.pyarrow@21.0.0: 1 known vulnerabilityPYSEC-2026-113
uv.lock - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.pymdown-extensions@10.16.1: 3 known vulnerabilitiesPYSEC-2026-2999, PYSEC-2026-3609, PYSEC-2026-3654
uv.lock - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.pypdf@6.1.1: 66 known vulnerabilitiesPYSEC-2026-1827, PYSEC-2026-1828, PYSEC-2026-1829, PYSEC-2026-1831, PYSEC-2026-1832 +61 more
uv.lock - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.soupsieve@2.7: 4 known vulnerabilitiesPYSEC-2026-3071, PYSEC-2026-3072, PYSEC-2026-4170, PYSEC-2026-4171
uv.lock - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.torch@2.8.0: 8 known vulnerabilitiesPYSEC-2025-203, PYSEC-2025-204, PYSEC-2025-206, PYSEC-2026-139, PYSEC-2026-2286 +3 more
uv.lock - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.tornado@6.5.2: 17 known vulnerabilitiesPYSEC-2025-265, PYSEC-2025-266, PYSEC-2025-267, PYSEC-2026-140, PYSEC-2026-2287 +12 more
uv.lock - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.ujson@5.10.0: 4 known vulnerabilitiesPYSEC-2026-2291, PYSEC-2026-2292, PYSEC-2026-2293, PYSEC-2026-2294
uv.lock - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.urllib3@2.5.0: 6 known vulnerabilitiesPYSEC-2026-141, PYSEC-2026-1994, PYSEC-2026-1996, PYSEC-2026-1998, PYSEC-2026-4175 +1 more
uv.lock - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.virtualenv@20.34.0: 20 known vulnerabilitiesPYSEC-2026-2009, PYSEC-2026-4011, PYSEC-2026-4012, PYSEC-2026-4013, PYSEC-2026-4014 +15 more
uv.lock - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.Install or build failed in a clean environmentnts4pharma==1.49.1 is available and you require aiagents4pharma, we can conclude that your requirements are unsatisfiable. hint: You require CPython 3.14 (`cp314`), but we only found wheels for `torch` (v2.8.0) with the following Python ABI tags: `cp39`, `cp310`, `cp311`, `cp312`, `cp313`, `cp313t`
- mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.Install contacted hosts other than package registriesreleases.astral.sh
- lowLow. Minor, or common in normal tools. Shown for information.Possible example credential in docs/tests: generic-api-key
aiagents4pharma/talk2knowledgegraphs/tests/files/primekg_ibd_text_graph.pkl:60 - lowLow. Minor, or common in normal tools. Shown for information.Possible example credential in docs/tests: generic-api-key
aiagents4pharma/talk2knowledgegraphs/tests/files/primekg_ibd_pyg_graph.pkl:164036 - lowLow. Minor, or common in normal tools. Shown for information.bleach@6.2.0: 2 known vulnerabilitiesGHSA-8rfp-98v4-mmr6, GHSA-gj48-438w-jh9v
uv.lock - lowLow. Minor, or common in normal tools. Shown for information.datasets@4.1.1: 1 known vulnerabilityPYSEC-2026-3716
uv.lock - lowLow. Minor, or common in normal tools. Shown for information.filelock@3.19.1: 4 known vulnerabilitiesPYSEC-2026-1374, PYSEC-2026-1375, GHSA-69hj-f68j-2879, GHSA-8mx5-7m5m-r77g
uv.lock - lowLow. Minor, or common in normal tools. Shown for information.fonttools@4.59.0: 1 known vulnerabilityPYSEC-2026-1389
uv.lock - lowLow. Minor, or common in normal tools. Shown for information.idna@3.10: 1 known vulnerabilityPYSEC-2026-215
uv.lock - lowLow. Minor, or common in normal tools. Shown for information.langchain-openai@0.3.0: 1 known vulnerabilityPYSEC-2026-76
uv.lock - lowLow. Minor, or common in normal tools. Shown for information.marshmallow@3.26.1: 1 known vulnerabilityPYSEC-2026-1605
uv.lock - lowLow. Minor, or common in normal tools. Shown for information.mkdocs-material@9.6.21: 1 known vulnerabilityPYSEC-2026-3864
uv.lock - lowLow. Minor, or common in normal tools. Shown for information.pygments@2.19.2: 1 known vulnerabilityPYSEC-2026-2987
uv.lock - lowLow. Minor, or common in normal tools. Shown for information.pylint@3.3.8: 1 known vulnerabilityGHSA-22qq-2fwx-7p67
uv.lock - lowLow. Minor, or common in normal tools. Shown for information.pytest@8.4.2: 1 known vulnerabilityPYSEC-2026-1845
uv.lock - lowLow. Minor, or common in normal tools. Shown for information.python-dotenv@1.1.1: 1 known vulnerabilityPYSEC-2026-2270
uv.lock - lowLow. Minor, or common in normal tools. Shown for information.requests@2.32.5: 1 known vulnerabilityPYSEC-2026-2275
uv.lock - lowLow. Minor, or common in normal tools. Shown for information.setuptools@80.9.0: 2 known vulnerabilitiesPYSEC-2026-3447, GHSA-xmj3-9gf7-h52w
uv.lock - lowLow. Minor, or common in normal tools. Shown for information.streamlit@1.50.0: 2 known vulnerabilitiesPYSEC-2026-212, PYSEC-2026-2285
uv.lock - lowLow. Minor, or common in normal tools. Shown for information.No manifest declaring network access and environment variables (agent.json)
Network activity
During install
files.pythonhosted.orgpypi.orgreleases.astral.sh
While running
Not run — the code wasn't started in this scan
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