BioDSH AI Agent
by sagirimoThe bioinformatics agent desktop for clinicians and wet-lab scientists — built on DeepSeek Harness. One-click installers, a skill store, offline mode.
BioDSH is an open-source ai agent by sagirimo, written mainly in Python, with 65 GitHub stars and the MIT license. Its code was last updated Oct 23, 2026.
Scan summary: scanned Nov 5, 2026 at commit 77f5b17. Seen able to run shell commands, connect to the internet. Scan policy
ScannedScanned. The automated checks below ran on the commit shown. Read each line for what was and was not covered.
Full scan at
77f5b17 · Nov 5, 2026 ScannedStatic, secrets and dependency checks completed with no critical findings.
Warning. This check found something worth reading in the findings below. It is not proof of a problem.Static code scanwarnWarning. This check found something worth reading in the findings below. It is not proof of a problem.
Passed. This check ran and found nothing it flags.Secrets scanpassPassed. This check ran and found nothing it flags.
Flagged. This check found an issue. See the findings below.Dependency audit131 known vulnerabilitiesfailFlagged. This check found an issue. See the findings below.
Warning. This check found something worth reading in the findings below. It is not proof of a problem.ManifestnonewarnWarning. This check found something worth reading in the findings below. It is not proof of a problem.
Not applicable. This check does not apply to this kind of project, or it was not run in this scan.Buildn/aNot applicable. This check does not apply to this kind of project, or it was not run in this scan.
Not applicable. This check does not apply to this kind of project, or it was not run in this scan.Boot & handshaken/aNot applicable. This check does not apply to this kind of project, or it was not run in this scan.
Not applicable. This check does not apply to this kind of project, or it was not run in this scan.Network egressn/aNot applicable. This check does not apply to this kind of project, or it was not run in this scan.
Not applicable. This check does not apply to this kind of project, or it was not run in this scan.Reproducible (×3)n/aNot applicable. This check does not apply to this kind of project, or it was not run in this scan.
Findings (35)
- highHigh. Something risky that needs a close look before you install.dependencies issueDetails are available to the maintainer after claiming this listing.
- highHigh. Something risky that needs a close look before you install.dependencies issueDetails are available to the maintainer after claiming this listing.
- highHigh. Something risky that needs a close look before you install.dependencies issueDetails are available to the maintainer after claiming this listing.
- mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.Runs shell commands. Fine for some tools, but it means the agent can run anything your user can.
biodsh-core/skills/desktop-control/control.py:764 - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.Contacts a hard-coded IP address instead of a domain name.
desktop/site/build_sky_site.py:17 - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.@modelcontextprotocol/client@2.0.0: 2 known vulnerabilitiesGHSA-6prh-2h8m-c8cw, GHSA-6qxp-vccf-f47h
desktop/package-lock.json - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.brace-expansion@1.1.18: 3 known vulnerabilitiesGHSA-6j4f-fj2g-mc7p, GHSA-q2hr-2g5m-vwhr, GHSA-qhr7-859c-m2p7
desktop/package-lock.json - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.brace-expansion@2.1.4: 3 known vulnerabilitiesGHSA-6j4f-fj2g-mc7p, GHSA-q2hr-2g5m-vwhr, GHSA-qhr7-859c-m2p7
desktop/package-lock.json - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.brace-expansion@5.0.9: 3 known vulnerabilitiesGHSA-6j4f-fj2g-mc7p, GHSA-q2hr-2g5m-vwhr, GHSA-qhr7-859c-m2p7
desktop/package-lock.json - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.electron@43.4.1: 9 known vulnerabilitiesGHSA-2p8c-gr87-2676, GHSA-3qxv-5xgr-q7w9, GHSA-98mx-cjp9-gchm, GHSA-997q-gvvc-jwmx, GHSA-fw47-9c62-h3vw +4 more
desktop/package-lock.json - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.fast-uri@3.1.6: 7 known vulnerabilitiesGHSA-333x-w4r6-6crp, GHSA-58mr-gqgx-xq4g, GHSA-hrr3-gc8f-f4qj, GHSA-qw65-cvwx-89v3, GHSA-w74x-v6f9-j3xg +2 more
desktop/package-lock.json - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.fflate@0.8.2: 1 known vulnerabilityGHSA-px8p-9vwx-vf98
desktop/package-lock.json - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.source-map-js@1.2.1: 1 known vulnerabilityGHSA-68fv-2mgg-jv7q
desktop/package-lock.json - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.undici@6.28.0: 8 known vulnerabilitiesGHSA-2m5v-pch6-74hx, GHSA-3wwx-pv8p-q78v, GHSA-4qv8-2p9j-2685, GHSA-9fm3-97px-rjf6, GHSA-qrxm-fqhp-jwvm +3 more
desktop/package-lock.json - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.undici@7.29.0: 18 known vulnerabilitiesGHSA-2gqq-gqf2-x968, GHSA-2jfj-6hjv-fm6j, GHSA-2m5v-pch6-74hx, GHSA-3wwx-pv8p-q78v, GHSA-3xpg-4rpp-hhhm +13 more
desktop/package-lock.json - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.vite@6.4.3: 5 known vulnerabilitiesGHSA-587h-7wmj-h5pm, GHSA-698v-4r3x-3vcv, GHSA-9jrq-w75r-8gcw, GHSA-r825-w8mm-5pxw, GHSA-rq7h-c2jc-7f22
desktop/package-lock.json - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.sharp@0.34.5: 3 known vulnerabilitiesGHSA-f88m-g3jw-g9cj, GHSA-rgj7-g3m4-5g8c, GHSA-wq5f-xc86-pv6w
desktop/resources/embed/package-lock.json - lowLow. Minor, or common in normal tools. Shown for information.minimatch@10.2.6: 1 known vulnerabilityGHSA-g3hv-75wg-m249
desktop/package-lock.json - lowLow. Minor, or common in normal tools. Shown for information.minimatch@9.0.9: 1 known vulnerabilityGHSA-g3hv-75wg-m249
desktop/package-lock.json - lowLow. Minor, or common in normal tools. Shown for information.glib@0.18.5: 1 known vulnerabilityRUSTSEC-2024-0429
desktop/src-tauri/Cargo.lock - lowLow. Minor, or common in normal tools. Shown for information.proc-macro-error@1.0.4: 1 known vulnerabilityRUSTSEC-2024-0370
desktop/src-tauri/Cargo.lock - lowLow. Minor, or common in normal tools. Shown for information.rustls@0.23.43: 4 known vulnerabilitiesRUSTSEC-2026-0285, RUSTSEC-2026-0346, RUSTSEC-2026-0348, RUSTSEC-2026-0349
desktop/src-tauri/Cargo.lock - lowLow. Minor, or common in normal tools. Shown for information.rustls-webpki@0.103.15: 1 known vulnerabilityRUSTSEC-2026-0382
desktop/src-tauri/Cargo.lock - lowLow. Minor, or common in normal tools. Shown for information.tokio@1.53.1: 1 known vulnerabilityRUSTSEC-2026-0386
desktop/src-tauri/Cargo.lock - lowLow. Minor, or common in normal tools. Shown for information.unic-char-property@0.9.0: 1 known vulnerabilityRUSTSEC-2025-0081
desktop/src-tauri/Cargo.lock - lowLow. Minor, or common in normal tools. Shown for information.unic-char-range@0.9.0: 1 known vulnerabilityRUSTSEC-2025-0075
desktop/src-tauri/Cargo.lock - lowLow. Minor, or common in normal tools. Shown for information.unic-common@0.9.0: 1 known vulnerabilityRUSTSEC-2025-0080
desktop/src-tauri/Cargo.lock - lowLow. Minor, or common in normal tools. Shown for information.unic-ucd-ident@0.9.0: 1 known vulnerabilityRUSTSEC-2025-0100
desktop/src-tauri/Cargo.lock - lowLow. Minor, or common in normal tools. Shown for information.unic-ucd-version@0.9.0: 1 known vulnerabilityRUSTSEC-2025-0098
desktop/src-tauri/Cargo.lock - lowLow. Minor, or common in normal tools. Shown for information.webpki-root-certs@1.0.9: 1 known vulnerabilityRUSTSEC-2026-0383
desktop/src-tauri/Cargo.lock - lowLow. Minor, or common in normal tools. Shown for information.webpki-roots@1.0.9: 1 known vulnerabilityRUSTSEC-2026-0381
desktop/src-tauri/Cargo.lock - lowLow. Minor, or common in normal tools. Shown for information.zbus_names@4.3.4: 1 known vulnerabilityRUSTSEC-2026-0371
desktop/src-tauri/Cargo.lock - lowLow. Minor, or common in normal tools. Shown for information.zvariant@5.15.0: 1 known vulnerabilityRUSTSEC-2026-0370
desktop/src-tauri/Cargo.lock - lowLow. Minor, or common in normal tools. Shown for information.zvariant_derive@5.15.0: 1 known vulnerabilityRUSTSEC-2026-0372
desktop/src-tauri/Cargo.lock - lowLow. Minor, or common in normal tools. Shown for information.No manifest declaring network access and environment variables (agent.json)
Automated result for the commit shown. See our scan policy. View the scan log
Maintainers can claim the listing to rescan, or dispute a result.
BioDSH alternatives
View more →Similar ai agents in Developer Tools, ranked by GitHub stars. Compare licence, recent activity and scan status before you choose.
| Name | Stars | Licence | Last updated | Scan |
|---|---|---|---|---|
| BioDSH (this page) sagirimo | 65 | MIT | Oct 23, 2026 | Scanned, no flagged issues |
| Deepseek Harness deepseek-ai | 268k | MIT | Oct 30, 2026 | Scanned, no flagged issues |
| Ponytail DietrichGebert | 182k | MIT | Oct 29, 2026 | Scanned, no flagged issues |
| Orca stablyai | 112k | MIT | Nov 1, 2026 | Scanned, no flagged issues |
| Deer Flow bytedance | 85k | MIT | Nov 1, 2026 | Scanned, no flagged issues |
| Ruflo ruvnet | 80k | MIT | Nov 1, 2026 | Scanned, no flagged issues |