CyteType AI Agent
by NygenAnalyticsMulti-agent LLM driven cell type annotation for single-cell RNA-Seq data
CyteType is an open-source ai agent by NygenAnalytics, written mainly in Python, with 139 GitHub stars and the BSD-3-Clause license. Its code was last updated Oct 29, 2026.
Scan summary: scanned Nov 5, 2026 at commit c4a77dd. No capabilities flagged by our checks. Scan policy
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c4a77dd · Nov 5, 2026 ScannedStatic, secrets and dependency checks completed with no critical findings.
Passed. This check ran and found nothing it flags.Static code scanpassPassed. This check ran and found nothing it flags.
Passed. This check ran and found nothing it flags.Secrets scanpassPassed. This check ran and found nothing it flags.
Flagged. This check found an issue. See the findings below.Dependency audit134 known vulnerabilitiesfailFlagged. This check found an issue. See the findings below.
Warning. This check found something worth reading in the findings below. It is not proof of a problem.ManifestnonewarnWarning. This check found something worth reading in the findings below. It is not proof of a problem.
Flagged. This check found an issue. See the findings below.BuildfailFlagged. This check found an issue. See the findings below.
Not applicable. This check does not apply to this kind of project, or it was not run in this scan.Boot & handshaken/aNot applicable. This check does not apply to this kind of project, or it was not run in this scan.
Not applicable. This check does not apply to this kind of project, or it was not run in this scan.Network egressn/aNot applicable. This check does not apply to this kind of project, or it was not run in this scan.
Not applicable. This check does not apply to this kind of project, or it was not run in this scan.Reproducible (×3)n/aNot applicable. This check does not apply to this kind of project, or it was not run in this scan.
Findings (21)
- highHigh. Something risky that needs a close look before you install.dependencies issueDetails are available to the maintainer after claiming this listing.
- highHigh. Something risky that needs a close look before you install.dependencies issueDetails are available to the maintainer after claiming this listing.
- highHigh. Something risky that needs a close look before you install.dependencies issueDetails are available to the maintainer after claiming this listing.
- highHigh. Something risky that needs a close look before you install.dependencies issueDetails are available to the maintainer after claiming this listing.
- highHigh. Something risky that needs a close look before you install.dependencies issueDetails are available to the maintainer after claiming this listing.
- mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.mistune@3.2.0: 17 known vulnerabilitiesPYSEC-2026-168, PYSEC-2026-2206, PYSEC-2026-2207, PYSEC-2026-2208, PYSEC-2026-2209 +12 more
uv.lock - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.nbconvert@7.17.0: 3 known vulnerabilitiesPYSEC-2026-2229, PYSEC-2026-2230, GHSA-pjvx-prjx-h659
uv.lock - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.soupsieve@2.8.3: 4 known vulnerabilitiesPYSEC-2026-3071, PYSEC-2026-3072, PYSEC-2026-4170, PYSEC-2026-4171
uv.lock - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.tornado@6.5.4: 14 known vulnerabilitiesPYSEC-2026-140, PYSEC-2026-2287, PYSEC-2026-3387, PYSEC-2026-3388, PYSEC-2026-3389 +9 more
uv.lock - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.urllib3@2.6.3: 5 known vulnerabilitiesPYSEC-2026-141, PYSEC-2026-142, PYSEC-2026-4175, PYSEC-2026-4176, PYSEC-2026-4177
uv.lock - mediumMedium. Worth checking, often a vulnerable dependency or a setup problem.Install or build failed in a clean environmentvely, set the version in the environment with SETUPTOOLS_SCM_PRETEND_VERSION_FOR_CYTETYPE or VCS_VERSIONING_PRETEND_VERSION_FOR_CYTETYPE, as described in https://setuptools-scm.readthedocs.io/en/latest/config/ hint: Build failures usually indicate a problem with the package or the build environment
- lowLow. Minor, or common in normal tools. Shown for information.In tests/examples/docs: Deserializes data with pickle/marshal, which can execute code.
docs/build_docs.py:307 - lowLow. Minor, or common in normal tools. Shown for information.In tests/examples/docs: Deserializes data with pickle/marshal, which can execute code.
docs/build_docs.py:319 - lowLow. Minor, or common in normal tools. Shown for information.Possible example credential in docs/tests: generic-api-key
tests/test_docs_execution.py:694 - lowLow. Minor, or common in normal tools. Shown for information.bleach@6.3.0: 3 known vulnerabilitiesGHSA-8rfp-98v4-mmr6, GHSA-g75f-g53v-794x, GHSA-gj48-438w-jh9v
uv.lock - lowLow. Minor, or common in normal tools. Shown for information.idna@3.11: 1 known vulnerabilityPYSEC-2026-215
uv.lock - lowLow. Minor, or common in normal tools. Shown for information.pygments@2.19.2: 1 known vulnerabilityPYSEC-2026-2987
uv.lock - lowLow. Minor, or common in normal tools. Shown for information.pytest@9.0.2: 1 known vulnerabilityPYSEC-2026-1845
uv.lock - lowLow. Minor, or common in normal tools. Shown for information.requests@2.32.5: 1 known vulnerabilityPYSEC-2026-2275
uv.lock - lowLow. Minor, or common in normal tools. Shown for information.setuptools@82.0.0: 2 known vulnerabilitiesPYSEC-2026-3447, GHSA-xmj3-9gf7-h52w
uv.lock - lowLow. Minor, or common in normal tools. Shown for information.No manifest declaring network access and environment variables (agent.json)
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|---|---|---|---|---|
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